Skip to main content
guest
Join
|
Help
|
Sign In
CGRL
Home
guest
|
Join
|
Help
|
Sign In
Wiki Home
Recent Changes
Pages and Files
Members
Spring 2018 Workshops
Fall 2017 Workshops
Spring 2017 Workshops
Fall 2016 Workshops
Spring 2016 Workshops
Fall 2015 Workshops
Spring 2015 Workshops
Fall 2014 Workshops
Spring 2014 Workshops
Fall 2013 Workshops
Spring 2013 Workshops
RNASeqSpring2014
Edit
0
2
…
0
Tags
No tags
Notify
RSS
Backlinks
Source
Print
Export (PDF)
RNA-Seq Analysis
Instructors: Davide Risso and Anne Biton
February 20th, 2014
List of requirements (Please have these tools installed on your laptops before the workshop):
fastqc
samtools
Bowtie2
TopHat
(>= 2.0.1)
HTSeq
R
(version >= 2.15)
Bioconductor
(version >= 2.11)
edgeR
package
Yeast RNA-Seq data from Risso et al. (2011) [
fastq
] [
R package
] [
gene-level read counts
]
Quality Control, Mapping and Gene-level Summaries
(Anne)
Normalization and Differential Expression using edgeR
(Davide)
Javascript Required
You need to enable Javascript in your browser to edit pages.
help on how to format text
Turn off "Getting Started"
Home
...
Loading...
RNA-Seq Analysis
Instructors: Davide Risso and Anne Biton
February 20th, 2014
List of requirements (Please have these tools installed on your laptops before the workshop):
Quality Control, Mapping and Gene-level Summaries (Anne)
Normalization and Differential Expression using edgeR (Davide)