RNASeqFall2013

=RNA-Seq Analysis=

November 4, 2013
List of requirments:
 * [|fastqc]
 * [|samtools]
 * [|Bowtie2]
 * [|TopHat] (>= 2.0.1)
 * [|HTSeq]
 * __[|R]__ (version >= 2.15)
 * __[|Bioconductor]__ (version >= 2.11)
 * [|edgeR] package
 * Yeast RNA-Seq data from Risso et al. (2011) [[|fastq]] [[|R package]] gene-level read counts]

Quality Control, Mapping and Gene-level Summaries (Anne)

Normalization and Differential Expression using edgeR (Davide)