RNASeqSpring2013

=RNA-Seq Analysis=

April 8, 2013
List of requirments:
 * __[|R]__ (version >= 2.15)
 * __[|Bioconductor]__ (version >= 2.11)

Normalization and Differential Expression using edgeR (Davide)
 * Requirement:
 * [|edgeR] package
 * Yeast RNA-Seq data from Risso et al. (2011) [__[|R package]__]

Sequence Alignment (Marla)
 * Requirement:
 * [|TopHat]

Isoform Estimation (Marla)
 * Requirement:
 * [|Cufflinks]